Namespace for various utilities.
- Source:
Methods
(static) applyInverseTransform(options) → {Array.<number>}
Apply an affine transformation to a reference coordinate in the slide
coordinate system to map it into the total pixel matrix.
Parameters:
| Name | Type | Description | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
options |
Object | Options
Properties
|
Returns:
(column, row) image coordinate
- Type
- Array.<number>
(static) applyTransform(options) → {Array.<number>}
Apply an affine transformation to an image coordinate in the total pixel
matrix to map it into the slide coordinate system.
Parameters:
| Name | Type | Description | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
options |
Object | Options
Properties
|
Returns:
(x, y) reference coordinate
- Type
- Array.<number>
(static) are1DArraysAlmostEqual(array, array, eps) → {boolean}
Check if 1D arrays are equal.
Parameters:
| Name | Type | Description |
|---|---|---|
array |
Array.<number> | a |
array |
Array.<number> | b |
eps |
number |
Returns:
yes/no answer
- Type
- boolean
(static) are2DArraysAlmostEqual(array, array, eps) → {boolean}
Check if 2D arrays are equal.
Parameters:
| Name | Type | Description |
|---|---|---|
array |
Array.<number> | a |
array |
Array.<number> | b |
eps |
number |
Returns:
yes/no answer
- Type
- boolean
(static) areCodedConceptsEqual(codedConcept1, codedConcept2) → {boolean}
Check whether coded concepts are equal.
Parameters:
| Name | Type | Description |
|---|---|---|
codedConcept1 |
object | |
codedConcept2 |
object |
Returns:
yes/no answer
- Type
- boolean
(static) areNumbersAlmostEqual(a, b, eps) → {boolean}
Check if two numbers are equal.
Parameters:
| Name | Type | Default | Description |
|---|---|---|---|
a |
number | ||
b |
number | ||
eps |
number | 0.000001 |
Returns:
yes/no answer
- Type
- boolean
(static) buildInverseTransform() → {Array.<Array.<number>>}
Build an affine transformation matrix to map coordinates in the slide
coordinate system into the Total Pixel Matrix.
Parameters:
| Name | Type | Description |
|---|---|---|
options.offset |
Array.<number> | X and Y offset of the image in the slide coordinate system |
options.orientation |
Array.<number> | Direction cosines along the row and column direction of the Total Pixel Matrix for each of the three axis of the slide coordinate system |
options.spacing |
Array.<number> | Spacing between pixel rows and columns of the Total Pixel Matrix |
Returns:
3x3 affine transformation matrix
- Type
- Array.<Array.<number>>
(static) buildTransform(options) → {Array.<Array.<number>>}
Build an affine transformation matrix to map coordinates in the Total
Pixel Matrix into the slide coordinate system.
Parameters:
| Name | Type | Description | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
options |
Object | Options
Properties
|
Returns:
3x3 affine transformation matrix
- Type
- Array.<Array.<number>>
(static) computeRotation(options) → {number}
Compute the rotation of the image with respect to the frame of reference.
Parameters:
| Name | Type | Description | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
options |
Object | Options
Properties
|
Returns:
Angle
- Type
- number
(static) createRotationMatrix(options) → {Array.<Array.<number>>}
Create a rotation matrix.
Parameters:
| Name | Type | Description | ||||||
|---|---|---|---|---|---|---|---|---|
options |
Object | Options
Properties
|
Returns:
2x2 rotation matrix
- Type
- Array.<Array.<number>>
(static) createWindow(lowerBound, upperBound) → {Array.<number>}
Create window.
Parameters:
| Name | Type | Description |
|---|---|---|
lowerBound |
number | Lower bound of the window |
upperBound |
number | Upper bound of the window |
Returns:
Window center and width
- Type
- Array.<number>
(static) doContentItemsMatch(contentItem1, contentItem2) → {boolean}
Check wether two content items match.
Parameters:
| Name | Type | Description |
|---|---|---|
contentItem1 |
object | |
contentItem2 |
object |
Returns:
yes/no answer
- Type
- boolean
(static) getContentItemNameCodedConcept(contentItem) → {object}
Get name coded concept from content item.
Parameters:
| Name | Type | Description |
|---|---|---|
contentItem |
object |
Returns:
The concept name coded concept
- Type
- object
(static) mapPixelCoordToSlideCoord(options) → {Array.<number>}
Map 2D (column, row) image coordinates in the Total Pixel Matrix
to 3D (x, y, z) slide coordinates in the Frame of Reference.
Parameters:
| Name | Type | Description | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
options |
Object | Options
Properties
|
Returns:
(x, y, z) slide coordinates
- Type
- Array.<number>
(static) mapSlideCoordToPixelCoord(options) → {Array.<number>}
Map 3D (x, y, z) slide coordinates in the Frame of Reference to
2D (column, row) image coordinates in the Total Pixel Matrix.
Parameters:
| Name | Type | Description | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
options |
Object | Options
Properties
|
Returns:
(row, column) image coordinates
- Type
- Array.<number>
(static) rescale(value, minInput, maxInput, minOutput, maxOutput) → {number}
Rescale intensity from [minInput, maxInput] to [minOutput, maxOutput].
Parameters:
| Name | Type | Description |
|---|---|---|
value |
number | Input value that should be rescaled |
minInput |
number | Lower bound of the full input value range |
maxInput |
number | Upper bound of the full input value range |
minOutput |
number | Lower bound of the full output value range |
maxOutput |
number | Upper bound of the full output value range |
Returns:
Rescaled value
- Type
- number